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 All Vertebrates of the ICES-NATL-East-open-ocean

[   ICES-NATL-open-ocean   ]
[   Baltic Sea   ]
[   Mediterranean Sea   ]
[   ICES-NATL-West-open-ocean   ]
[   US-NE-LME   ]
[   CA-Scotian   ]
[   CA-GSL   ]
[   CA-Newfoundland-shelf   ]
[   ICES-NATL-East-open-ocean   ]
[   East-Greenland   ]
[   East-Greenland   ]
[   East-Greenland   ]
[   East-Greenland   ]
[   Celtic-Seas   ]
[   Celtic-Seas   ]
[   Iberian-Shelf   ]
Data Access
Links Table
The data files linked below are all-taxa Reference Compilations.

If you only want data from a single taxa group (e.g., only copepods or diatoms or dolphins),
follow the taxa group links found in the main MZGdb map interface pages.

The "All Invertebrates" files contain data from all of the zooplankton (crustacean+non-crustacean) and benthic taxa groups and subgroups.
The "All Vertebrates" files contain data from all of the fish and megafauna taxa groups and subgroups.
The "All Microbes + Protists" files contain data from all of the phytoplankton (microbes and protists) taxa groups and subgroups.
The "All Marine Fauna + Flora Combo" files contain all data from the All Invertebrates, All Vertebrates, All Microbes + Protists combined files.

The "World (All-World-Oceans)" geographic region includes data from all of the other ocean and seas sub-regions.

The "Mode-A" files contain species-only barcodes for species found in the current ocean, but those sequences may come from any other ocean.
The "Mode-B" files contain species-only barcodes sampled only in the current ocean for species found in the current ocean.
The "Mode-C" files contain genus and/or species sequences for species found in the current ocean, but those sequences may come from any other ocean.
The "Mode-D" files contain genus and/or species sequences sampled only in the current ocean for species found in the current ocean.

The entire MZGdb database is therefore available via the "All Plankton Combo (All-World-Oceans) Mode-A" data files.

MZGdb DATA FILES

Database-Version:   v2025-m10-01		 Mode-A

COI barcodes = 35945
12s barcodes = 7776
16s barcodes = 9169
18s barcodes = 450
28s barcodes = 156
Mode-B

COI barcodes = 3533
12s barcodes = 57
16s barcodes = 239
18s barcodes = 0
28s barcodes = 1
Mode-C

COI barcodes = 44599
12s barcodes = 8639
16s barcodes = 10286
18s barcodes = 459
28s barcodes = 274
Mode-D

COI barcodes = 3648
12s barcodes = 57
16s barcodes = 240
18s barcodes = 0
28s barcodes = 1
FASTA file (*.fasta) MZGdb fasta (mode-A)
COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean (mode-A) 		MZGdb fasta (mode-B)
COI | 12S | 16S | n/d | 28S

True "barcode" (species-only) data
from specific ocean (mode-B) 		MZGdb fasta (mode-C)
COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean (mode-C) 		MZGdb fasta (mode-D)
COI | 12S | 16S | n/d | 28S

Genus-spp and species data
from specific ocean (mode-D)
Mothur-formatted
Taxonomic Hierarchy file (*.txt)

Paired with fasta file above		 MZGdb Mothur (mode-A)
COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean (mode-A) 		MZGdb Mothur (mode-B)
COI | 12S | 16S | n/d | 28S

True "barcode" (species-only) data
from specific ocean (mode-B) 		MZGdb Mothur (mode-C)
COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean (mode-C) 		MZGdb Mothur (mode-D)
COI | 12S | 16S | n/d | 28S

Genus-spp and species data
from specific ocean (mode-D)
DADA2 file (*.fastq)

Single "fasta+taxa" DATA2 fastq file		 MZGdb DADA2 (mode-A)
n/d | n/d | n/d | n/d | n/d

True "barcode" (species-only) data
from ANY ocean (mode-A) 		MZGdb DADA2 (mode-B)
n/d | n/d | n/d | n/d | n/d

True "barcode" (species-only) data
from specific ocean (mode-B) 		MZGdb DADA2 (mode-C)
n/d | n/d | n/d | n/d | n/d

Genus-spp and species data
from ANY ocean (mode-C) 		MZGdb DADA2 (mode-D)
n/d | n/d | n/d | n/d | n/d

Genus-spp and species data
from specific ocean (mode-D)
MZGdb v3.0

"full format"

go to
Format Description		CSV

Excel-friendly full format
comma-separated-values		 MZGdb CSV (mode-A)
COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean (mode-A) 		MZGdb CSV (mode-B)
COI | 12S | 16S | n/d | 28S

True "barcode" (species-only) data
from specific ocean (mode-B) 		MZGdb CSV (mode-C)
COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean (mode-C) 		MZGdb CSV (mode-D)
COI | 12S | 16S | n/d | 28S

Genus-spp and species data
from specific ocean (mode-D)
PSV

pipe-separated-values		 MZGdb PSV (mode-A)
COI | 12S | 16S | 18S | 28S

True "barcode" (species-only) data
from ANY ocean (mode-A) 		MZGdb PSV (mode-B)
COI | 12S | 16S | n/d | 28S

True "barcode" (species-only) data
from specific ocean (mode-B) 		MZGdb PSV (mode-C)
COI | 12S | 16S | 18S | 28S

Genus-spp and species data
from ANY ocean (mode-C) 		MZGdb PSV (mode-D)
COI | 12S | 16S | n/d | 28S

Genus-spp and species data
from specific ocean (mode-D)











Mon Oct 27 05:38:42 PM EDT 2025